Interesting. I'll definitely check that out when I get back to that vehicle again. It didn't sound like it was coming from that area, but outside sounds can fool you when driving fast on the freeway.So I found a possible cause for the sound I was hearing which is similar to what you are describing. When I opened the passenger side rear door I happened to bang it with my elbow and there is a piece of trim on the leading edge of the window frame that is loose and made a pretty loud clattering/clicking sound. When the door is closed and you thump the door frame with the palm of your hand you can hear the clicking.
I think the piece might be there to reduce wind noise and fill the gap between the rear edge of the front door and the leading edge of the rear door. It's loose on the passenger side and it's tight and doesn't move on the drivers side.
I put 5, 1 inch long pieces of 3M automotive trim double sided tape under the edge of the trim piece to stick it to the painted frame. That stopped it from moving and making any noise when you thump the door frame (open and shut).
On the highway the sound seems to have stopped.